Showing : normalized counts • reset
1
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2
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1.6k
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scran/scater Normalized matrix
scran scater normalized counts
updated 7.0 years ago by ★ 29k • written 7.0 years ago by ▴ 90
0
votes
2
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1.6k
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Get normalized COUNTS Deseq2
deseq2 normalized counts
updated 7.0 years ago by ★ 13k • written 7.0 years ago by • 0
0
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0
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1.8k
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DESeq2: Extract mean normalized log2 counts by level
normalized counts log2
7.3 years ago agdif ▴ 10
4
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2
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8.6k
views
DESeq2 : normalized counts
rnaseq deseq2 normalized counts
updated 7.6 years ago by 43k • written 7.6 years ago by ▴ 10
0
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14
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6.3k
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DESeq2 count normalization
deseq2 normalization normalized counts
updated 7.7 years ago by 43k • written 7.8 years ago by • 0
1
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4
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2.2k
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Normalized counts after fitting linear model with batch effects - edgeR
edger batch effect normalized counts
updated 7.9 years ago by ★ 7.9k • written 7.9 years ago by • 0
4
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2
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1.7k
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Normalize to additional variable (brain weight) in DESeq2
deseq2 cqn normalization normalized counts
updated 8.2 years ago by 43k • written 8.2 years ago by • 0
2
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1
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1.4k
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Problems with Edge R normalization in same sample but using different ref genomes.
normalized counts grch37 grch38 r bioconductor
8.2 years ago salvocomplicazioni1 • 0
1
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2
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2.1k
views
cn.MOPS - reporting log normalized read counts as table
cn.mops log normalized counts table
updated 8.4 years ago by ▴ 540 • written 8.4 years ago by • 0
1
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3
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1.8k
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DESeq2: Do basemean values take into account interaction effects?
deseq2 counts normalized counts
updated 9.4 years ago by ★ 13k • written 9.4 years ago by ▴ 40
2
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2
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2.4k
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Analysis of shRNA screen data
shrna edger deseq2 differential expression normalized counts
9.4 years ago Jane Merlevede ▴ 90
1
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6
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3.6k
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Diffbind EdgeR and DESeq2 normalization
diffbind normalized counts
9.4 years ago GFM ▴ 20
12 results • Page 1 of 1
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Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0
Thanks for the reply Gordon. I am also working on the project and have been tasked to reformulate and add some details. We're interested i…
Answer: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k
The limma Users Guide explains how to test for interactions or to test for contrasts very easily. limma can work with any design matrix, bu…
Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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