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Showing :
normalized counts
•
reset
1
vote
2
replies
1.4k
views
scran/scater Normalized matrix
scran
scater
normalized counts
updated 6.1 years ago by
Aaron Lun
★ 28k • written 6.1 years ago by
Radek
▴ 90
0
votes
2
replies
1.4k
views
Get normalized COUNTS Deseq2
deseq2
normalized counts
updated 6.2 years ago by
Steve Lianoglou
★ 13k • written 6.2 years ago by
anaQ
• 0
0
votes
0
replies
1.6k
views
DESeq2: Extract mean normalized log2 counts by level
normalized counts
log2
6.4 years ago
agdif
▴ 10
4
votes
2
replies
8.3k
views
DESeq2 : normalized counts
rnaseq
deseq2
normalized counts
updated 6.7 years ago by
Michael Love
43k • written 6.7 years ago by
JoannaF
▴ 10
0
votes
14
replies
5.5k
views
DESeq2 count normalization
deseq2
normalization
normalized counts
updated 6.9 years ago by
Michael Love
43k • written 6.9 years ago by
naets_matthias
• 0
1
vote
4
replies
1.9k
views
Normalized counts after fitting linear model with batch effects - edgeR
edger
batch effect
normalized counts
updated 7.1 years ago by
Ryan C. Thompson
★ 7.9k • written 7.1 years ago by
Yahan
• 0
4
votes
2
replies
1.5k
views
Normalize to additional variable (brain weight) in DESeq2
deseq2
cqn
normalization
normalized counts
updated 7.3 years ago by
Michael Love
43k • written 7.3 years ago by
mark.ebbert
• 0
2
votes
1
reply
1.2k
views
Problems with Edge R normalization in same sample but using different ref genomes.
normalized counts
grch37
grch38
r bioconductor
7.4 years ago
salvocomplicazioni1
• 0
1
vote
2
replies
1.9k
views
cn.MOPS - reporting log normalized read counts as table
cn.mops
log
normalized counts
table
updated 7.6 years ago by
Günter Klambauer
▴ 540 • written 7.6 years ago by
falk.zakrzewski
• 0
1
vote
3
replies
1.6k
views
DESeq2: Do basemean values take into account interaction effects?
deseq2
counts
normalized counts
updated 8.6 years ago by
Steve Lianoglou
★ 13k • written 8.6 years ago by
snamjoshi87
▴ 40
2
votes
2
replies
2.1k
views
Analysis of shRNA screen data
shrna
edger
deseq2
differential expression
normalized counts
8.6 years ago
Jane Merlevede
▴ 90
1
vote
6
replies
3.2k
views
Diffbind EdgeR and DESeq2 normalization
diffbind
normalized counts
8.6 years ago
GFM
▴ 20
12 results • Page
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Answer: Automatically install dependencies
by
shepherl
4.1k
Since `BiocManager::install` is a wrapper around `install.packages` you should be able to use the dependencies argument. Default is the de…
Comment: For some reason I can't update BiocManager to 3.20
by
azm.ana2
• 0
Sorry i apologize for the delay. Thank you very much for the answer. I have two supervisers and the one who knows about the computer is com…
Comment: For some reason I can't update BiocManager to 3.20
by
azm.ana2
• 0
Sorry i apologize for the delay. Thank you very much for the answer. I have two supervisers and the one who knows about the computer is com…
Answer: SingleR with multiple single cell references
by
Aaron Lun
★ 28k
> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…
Answer: Automatically install dependencies
by
ATpoint
★ 4.7k
The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…
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Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
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